Laboratory Information Management System – LIMS

Most of the multi-project research-focused laboratories (like core facilities) try to deal with registration, tracking, integration and monitoring of samples and their analyses. As these data contain personal information, secure storage and access has high priority, also due to new European legislation. To face these challenges, we have developed a web-based Laboratory Information Management System…

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SnakeLines: integrated set of computational pipelines for paired-end sequencing reads

Introduction Development of sequencing technologies with massive parallel throughput allowed laboratories around the world to analyze DNA fragments of various organisms. However, actual use of DNA sequencing data is impeded by two main obstructs. Firstly, DNA data processing and interpretation is often difficult for researchers and clinicians with small computational background. Secondly, due to the…

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Variant Annotation Filtering and Prioritization

Introduction Analyses based on massively parallel sequencing detect vast amounts of variants, while only few are responsible for traits of interest. Successful identification of these few variants requires annotation with various attributes – especially function prediction score and conservation score. Different annotation data is scattered across various databases, which makes manual annotation a time-consuming and…

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