We have collaborated on the following publications

2020

41.

Böhmer, M; Ozdín, D; Račko, M; Lichvár, M; Budiš, J; Szemes, T

Identification of bacterial and fungal communities in the roots of orchids and surrounding soil in heavy metal contaminated area of mining heaps Journal Article

Applied Sciences (Switzerland), 10 (20), pp. 1-18, 2020, ISSN: 20763417.

Abstract | Links | BibTeX | Tags: Bacteria, Environmental microbiome, Metagenomics, Plants

40.

Böhmer, M; Smoľak, D; Ženišová, K; Čaplová, Z; Pangallo, D; Puškárová, A; Bučková, M; Cabicarová, T; Budiš, J; Šoltýs, K; Rusňáková, D; Kuchta, T; Szemes, T

Comparison of microbial diversity during two different wine fermentation processes Journal Article

FEMS microbiology letters, 367 (18), 2020, ISSN: 15746968.

Abstract | Links | BibTeX | Tags: Bacteria, Food microbiome, Metagenomics, Plants

39.

Hyblova, M; Harsanyova, M; Nikulenkov-Grochova, D; Kadlecova, J; Kucharik, M; Budis, J; Minarik, G

Validation of copy number variants detection from pregnant plasma using low-pass whole-genome sequencing in noninvasive prenatal testing-like settings Journal Article

Diagnostics, 10 (8), 2020, ISSN: 20754418.

Abstract | Links | BibTeX | Tags: Copy number variation, Fetal fraction, Non-invasive prenatal testing, Validation

38.

Kucharik, M; Gnip, A; Hyblova, M; Budis, J; Strieskova, L; Harsanyova, M; Pös, O; Kubiritova, Z; Radvanszky, J; Minarik, G; Szemes, T

Non-invasive prenatal testing (NIPT) by low coverage genomic sequencing: Detection limits of screened chromosomal microdeletions Journal Article

PLoS ONE, 15 (8 August), 2020, ISSN: 19326203.

Abstract | Links | BibTeX | Tags: Copy number variation, Fetal fraction, Non-invasive prenatal testing, Validation

37.

Šubr, Z; Predajňa, L; Šoltys, K; Bokor, B; Budiš, J; Glasa, M

Comparative transcriptome analysis of two cucumber cultivars with different sensitivity to cucumber mosaic virus infection Journal Article

Pathogens, 9 (2), 2020, ISSN: 20760817.

Abstract | Links | BibTeX | Tags: Plants, Transcriptomics, Viruses

36.

Bielik, V; Hric, I; BaláŽ, V; Penesová, A; Vávrová, S; Grones, J; Bokor, B; Budiš, J; Bohmer, M; Minárik, G; Augustovičová, D; Šoltys, K

Gut microbiota diversity in lean athletes is associated with positive energy balance Journal Article

Annals of Nutrition and Metabolism, 2020, ISSN: 02506807.

Abstract | Links | BibTeX | Tags: Bacteria, Gut microbiome, Metagenomics

35.

Kiani, A K; Paolacci, S; Scanzano, P; Michelini, S; Capodicasa, N; DÁgruma, L; Notarangelo, A; Tonini, G; Piccinelli, D; Farshid, K R; Petralia, P; Fulcheri, E; Buffelli, F; Chiurazzi, P; Terranova, C; Plotti, F; Angioli, R; Castori, M; Pös, O; Szemes, T; Bertelli, M

Prenatal genetic diagnosis: Fetal therapy as a possible solution to a positive test Journal Article

Acta bio-medica : Atenei Parmensis, 91 (13S), pp. e2020021, 2020, ISSN: 25316745.

Abstract | Links | BibTeX | Tags: Non-invasive prenatal testing, Prenatal diagnosis, Prenatal therapy, Review

34.

Pös, Z; Pös, O; Styk, J; Mocova, A; Strieskova, L; Budis, J; Kadasi, L; Radvanszky, J; Szemes, T

Technical and methodological aspects of cell‐free nucleic acids analyzes Journal Article

International Journal of Molecular Sciences, 21 (22), pp. 1-43, 2020, ISSN: 16616596.

Abstract | Links | BibTeX | Tags: Body fluids, Cell-free nucleic acids, Liquid biopsy, Non-invasive prenatal testing, Review

2019

33.

Sekelska, M; Izsakova, A; Kubosova, K; Tilandyova, P; Csekes, E; Kuchova, Z; Hyblova, M; Harsanyova, M; Kucharik, M; Budis, J; Szemes, T; Minarik, G

Result of prospective validation of the trisomy Test® for the detection of chromosomal trisomies Journal Article

Diagnostics, 9 (4), 2019, ISSN: 20754418.

Abstract | Links | BibTeX | Tags: Aneuploidy, Fetal fraction, Non-invasive prenatal testing, Validation

32.

Pös, O; Budis, J; Kubiritova, Z; Kucharik, M; Duris, F; Radvanszky, J; Szemes, T

Identification of structural variation from NGS-based non-invasive prenatal testing Journal Article

International Journal of Molecular Sciences, 20 (18), 2019, ISSN: 16616596.

Abstract | Links | BibTeX | Tags: Copy number variation, Non-invasive prenatal testing, Population study

31.

Pangallo, D; Kraková, L; Puškárová, A; Šoltys, K; Bučková, M; Koreňová, J; Budiš, J; Kuchta, T

Transcription activity of lactic acid bacterial proteolysis-related genes during cheese maturation Journal Article

Food Microbiology, 82 , pp. 416-425, 2019, ISSN: 07400020.

Abstract | Links | BibTeX | Tags: Bacteria, Food microbiome, Metagenomics, Transcriptomics

30.

Gazdarica, J; Hekel, R; Budis, J; Kucharik, M; Duris, F; Radvanszky, J; Turna, J; Szemes, T

Combination of fetal fraction estimators based on fragment lengths and fragment counts in non-invasive prenatal testing Journal Article

International Journal of Molecular Sciences, 20 (16), 2019, ISSN: 16616596.

Abstract | Links | BibTeX | Tags: Aneuploidy, Computational method, Fetal fraction, Non-invasive prenatal testing

29.

Planý, M; Czolderová, M; Kraková, L; Puškárová, A; Bučková, M; Šoltys, K; Budiš, J; Szemes, T; Mackulak, T; Wu, J -H; Pangallo, D

Biogas production: evaluation of the influence of K2FeO4 pretreatment of maple leaves (Acer platanoides) on microbial consortia composition Journal Article

Bioprocess and Biosystems Engineering, 42 (7), pp. 1151-1163, 2019, ISSN: 16157591.

Abstract | Links | BibTeX | Tags: Bacteria, Biogas production, Fungi, Metagenomics, Plants

28.

Gazdarica, J; Budis, J; Duris, F; Turna, J; Szemes, T

Adaptable model parameters in non-invasive prenatal testing lead to more stable predictions Journal Article

International Journal of Molecular Sciences, 20 (14), 2019, ISSN: 16616596.

Abstract | Links | BibTeX | Tags: Aneuploidy, Computational method, Non-invasive prenatal testing

27.

Strieskova, L; Gazdaricova, I; Kajsik, M; Soltys, K; Budis, J; Pos, O; Lickova, M; Klempa, B; Szemes, T

Ultracentrifugation enrichment protocol followed by total RNA sequencing allows assembly of the complete mitochondrial genome Journal Article

Journal of Biotechnology, 299 , pp. 8-12, 2019, ISSN: 01681656.

Abstract | Links | BibTeX | Tags: Assembly, Mitochondria, Single nucleotide variants, Transcriptomics

26.

Budis, J; Gazdarica, J; Radvanszky, J; Harsanyova, M; Gazdaricova, I; Strieskova, L; Frno, R; Duris, F; Minarik, G; Sekelska, M; Nagy, B; Szemes, T

Non-invasive prenatal testing as a valuable source of population specific allelic frequencies Journal Article

Journal of Biotechnology, 299 , pp. 72-78, 2019, ISSN: 01681656.

Abstract | Links | BibTeX | Tags: Non-invasive prenatal testing, Population study, Single nucleotide variants, Variant calling

25.

Kubiritova, Z; Gyuraszova, M; Nagyova, E; Hyblova, M; Harsanyova, M; Budis, J; Hekel, R; Gazdarica, J; Duris, F; Kadasi, L; Szemes, T; Radvanszky, J

On the critical evaluation and confirmation of germline sequence variants identified using massively parallel sequencing Journal Article

Journal of Biotechnology, 298 , pp. 64-75, 2019, ISSN: 01681656.

Abstract | Links | BibTeX | Tags: Genetic testing, Single nucleotide variants, Validation, Variant calling

24.

Budiš, J; Kucharík, M; Duriš, F; Gazdarica, J; Zrubcová, M; Ficek, A; Szemes, T; Brejová, B; Radvanszky, J

Dante: Genotyping of known complex and expanded short tandem repeats Journal Article

Bioinformatics, 35 (8), pp. 1310-1317, 2019, ISSN: 13674803.

Abstract | Links | BibTeX | Tags: Computational method, Genetic testing, Short tandem repeats, Variant calling

23.

Sádecká, J; Čaplová, Z; Tomáška, M; Šoltys, K; Kopuncová, M; Budiš, J; Drončovský, M; Kolek, E I; Koreňová, J; Kuchta, T

Microorganisms and volatile aroma-active compounds in bryndza cheese produced and marketed in Slovakia Journal Article

Journal of Food and Nutrition Research, 58 (4), pp. 382-392, 2019, ISSN: 13368672.

Abstract | Links | BibTeX | Tags: Bacteria, Food microbiome, Fungi, Metagenomics

22.

Tomáška, M; Čaplová, Z; Sádecká, J; Šoltys, K; Kopuncová, M; Budiš, J; Drončovský, M; Kolek, E; Koreňová, J; Kuchta, T

Microorganisms and volatile aroma-active compounds in “nite“and “vojky” cheeses Journal Article

Journal of Food and Nutrition Research, 58 (2), pp. 187-200, 2019, ISSN: 13368672.

Abstract | Links | BibTeX | Tags: Bacteria, Food microbiome, Fungi, Metagenomics

21.

Budis, J; Gazdarica, J; Radvanszky, J; Szucs, G; Kucharik, M; Strieskova, L; Gazdaricova, I; Harsanyova, M; Duris, F; Minarik, G; Sekelska, M; Nagy, B; Turna, J; Szemes, T

Combining count- And length-based z-scores leads to improved predictions in non-invasive prenatal testing Journal Article

Bioinformatics, 35 (8), pp. 1284-1291, 2019, ISSN: 13674803.

Abstract | Links | BibTeX | Tags: Aneuploidy, Computational method, Fetal fraction, Non-invasive prenatal testing, Prenatal diagnosis

20.

Nagyova, E; Radvanszky, J; Hyblova, M; Simovicova, V; Goncalvesova, E; Asselbergs, F W; Kadasi, L; Szemes, T; Minarik, G

Targeted next-generation sequencing in Slovak cardiomyopathy patients Journal Article

Bratislava Medical Journal, 120 (1), pp. 46-51, 2019, ISSN: 00069248.

Abstract | Links | BibTeX | Tags: Genetic testing, Single nucleotide variants, Variant calling

2018

19.

Duris, F; Gazdarica, J; Gazdaricova, I; Strieskova, L; Budis, J; Turna, J; Szemes, T

Mean and variance of ratios of proportions from categories of a multinomial distribution Journal Article

Journal of Statistical Distributions and Applications, 5 (1), 2018, ISSN: 21955832.

Abstract | Links | BibTeX | Tags: Aneuploidy, Computational method, Non-invasive prenatal testing

18.

Kraková, L; Šoltys, K; Puškárová, A; Bučková, M; Jeszeová, L; Kucharík, M; Budiš, J; Orovčík, L; Szemes, T; Pangallo, D

The microbiomes of a XVIII century mummy from the castle of Krásna Hôrka (Slovakia) and its surrounding environment Journal Article

Environmental Microbiology, 20 (9), pp. 3294-3308, 2018, ISSN: 14622912.

Abstract | Links | BibTeX | Tags: Bacteria, Biodeterioration, Fungi, Metagenomics

17.

Soltys, K; Vavrova, S; Budis, J; Palkova, L; Minarik, G; Grones, J

Draft genome sequence of Escherichia coli KL53 Journal Article

Genome Announcements, 6 (13), 2018, ISSN: 21698287.

Abstract | Links | BibTeX | Tags: Assembly, Bacteria

2017

16.

Radvanszky, J; Hyblova, M; Durovcikova, D; Hikkelova, M; Fiedler, E; Kadasi, L; Turna, J; Minarik, G; Szemes, T

Complex phenotypes blur conventional borders between Say–Barber–Biesecker–Young–Simpson syndrome and genitopatellar syndrome Journal Article

Clinical Genetics, 91 (2), pp. 339-343, 2017, ISSN: 00099163.

Abstract | Links | BibTeX | Tags: Case study, Genetic testing, Single nucleotide variants, Variant calling

15.

Sulo, P; Szabóová, D; Bielik, P; Poláková, S; Soltys, K; Jatzová, K; Szemes, T

The evolutionary history of Saccharomyces species inferred fromcompleted mitochondrial genomes and revision in the 'yeast mitochondrial genetic code' Journal Article

DNA Research, 24 (6), pp. 571-583, 2017, ISSN: 13402838.

Abstract | Links | BibTeX | Tags: Assembly, Fungi, Mitochondria, Phylogeny

14.

Cierna, Z; Janega, P; Grochal, F; Ferianec, V; Braxatorisova, T; Strieskova, L; Malova, J; Jungova, P; Szemes, T

The first reported case of meckel-gruber syndrome associated with abnormal karyotype mosaic trisomy 17 Journal Article

Pediatric and Developmental Pathology, 20 (5), pp. 449-454, 2017, ISSN: 10935266.

Abstract | Links | BibTeX | Tags: Aneuploidy, Case study, Genetic testing

2016

13.

Kraková, L; Šoltys, K; Budiš, J; Grivalský, T; Ďuriš, F; Pangallo, D; Szemes, T

Investigation of bacterial and archaeal communities: novel protocols using modern sequencing by Illumina MiSeq and traditional DGGE-cloning Journal Article

Extremophiles, 20 (5), pp. 795-808, 2016, ISSN: 14310651.

Abstract | Links | BibTeX | Tags: Bacteria, Environmental microbiome, Metagenomics

2015

12.

Minarik, G; Repiska, G; Hyblova, M; Nagyova, E; Soltys, K; Budis, J; Duris, F; Sysak, R; Bujalkova, M G; Vlkova-Izrael, B; Biro, O; Nagy, B; Szemes, T

Utilization of benchtop next generation sequencing platforms ion torrent PGM and miseq in noninvasive prenatal testing for chromosome 21 trisomy and testing of impact of in silico and physical size selection on its analytical performance Journal Article

PLoS ONE, 10 (12), 2015, ISSN: 19326203.

Abstract | Links | BibTeX | Tags: Aneuploidy, Non-invasive prenatal testing, Size selection, Validation

11.

Repiská, G; Sedláčková, T; Szemes, T; Minárik, G

Effect of different DNA concentration methods on performance of non-invasive fetal y-chromosomal short tandem repeat profiling from maternal plasma Journal Article

Fetal Diagnosis and Therapy, 37 (1), pp. 58-64, 2015, ISSN: 10153837.

Abstract | Links | BibTeX | Tags: Fetal fraction, Non-invasive prenatal testing, Prenatal diagnosis, Short tandem repeats

10.

Radvánszky, J; Minárik, G; Szemeš, T; Konečný, M; Kádaši, L

Interpretation of clinical significance of sequence variants in molecular genetics [Interpretácia klinického významu sekvenčných variantov v molekulovej genetike] Journal Article

Lekarsky Obzor, 64 (11), pp. 418-427, 2015, ISSN: 04574214.

Abstract | Links | BibTeX | Tags: Genetic testing, Review, Single nucleotide variants, Variant interpretation

2014

9.

Sedlackova, T; Repiska, G; Minarik, G

Selection of an optimal method for co-isolation of circulating DNA and miRNA from the plasma of pregnant women Journal Article

Clinical Chemistry and Laboratory Medicine, 52 (11), pp. 1543-1548, 2014, ISSN: 14346621.

Abstract | Links | BibTeX | Tags: Cell-free nucleic acids, Liquid biopsy, Non-invasive prenatal testing

2013

8.

Repiská, G; Sedláčková, T; Szemes, T; Celec, P; Minárik, G

Selection of the optimal manual method of cell free fetal DNA isolation from maternal plasma Journal Article

Clinical Chemistry and Laboratory Medicine, 51 (6), pp. 1185-1189, 2013, ISSN: 14346621.

Abstract | Links | BibTeX | Tags: Liquid biopsy, Non-invasive prenatal testing, Validation

7.

Minárik, G; Plank, L; Lasabová, Z; Szemes, T; Burjanivová, T; Szépe, P; Buzalková, V; Porubský, D; Šufliarsky, J

Spectrum of mutations in gastrointestinal stromal tumor patients - a population-based study from Slovakia Journal Article

APMIS, 121 (6), pp. 539-548, 2013, ISSN: 09034641.

Abstract | Links | BibTeX | Tags: Oncology, Population study, Single nucleotide variants

6.

Sedlackova, T; Repiska, G; Celec, P; Szemes, T; Minarik, G

Fragmentation of DNA affects the accuracy of the DNA quantitation by the commonly used methods Journal Article

Biological Procedures Online, 15 (1), 2013, ISSN: 14809222.

Abstract | Links | BibTeX | Tags: Liquid biopsy, Non-invasive prenatal testing, Validation

5.

Kamodyová, N; Durdiaková, J; Celec, P; Sedláčková, T; Repiská, G; Sviežená, B; Minárik, G

Prevalence and persistence of male DNA identified in mixed saliva samples after intense kissing Journal Article

Forensic Science International: Genetics, 7 (1), pp. 124-128, 2013, ISSN: 18724973.

Abstract | Links | BibTeX | Tags: Body fluids, Short tandem repeats

2010

4.

Vlková, B; Vávrová, S; Szemes, T; Minárik, G; Turňa, J; Celec, P

Testosterone and estradiol in maternal plasma and their relation to fetal sex Journal Article

Prenatal Diagnosis, 30 (8), pp. 806-807, 2010, ISSN: 01973851.

Links | BibTeX | Tags: Fetal sex determination, Non-invasive prenatal testing, Prenatal diagnosis

3.

Vlková, B; Szemes, T; Minárik, G; Turňa, J; Celec, P

Advances in the research of fetal DNA in maternal plasma for noninvasive prenatal diagnostics Journal Article

Medical Science Monitor, 16 (4), pp. RA85-RA91, 2010, ISSN: 12341010.

Abstract | Links | BibTeX | Tags: Liquid biopsy, Non-invasive prenatal testing, Review, Validation

2.

Vlková, B; Szemes, T; Minárik, G; Turňa, J; Celec, P

Circulating free fetal nucleic acids in maternal plasma and preeclampsia Journal Article

Medical Hypotheses, 74 (6), pp. 1030-1032, 2010, ISSN: 03069877.

Abstract | Links | BibTeX | Tags: Cell-free nucleic acids, Non-invasive prenatal testing, Preeclampsia

1.

Vlková, B; Szemes, T; Minárik, G; Turňa, J; Celec, P

Does maternal saliva contain fetal DNA usable for prenatal diagnostics? Journal Article

Medical Hypotheses, 74 (2), pp. 258-260, 2010, ISSN: 03069877.

Abstract | Links | BibTeX | Tags: Body fluids, Cell-free nucleic acids, Non-invasive prenatal testing, Prenatal diagnosis